PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_41E2E66D9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 94aa    MW: 10754.3 Da    PI: 10.0091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_41E2E66D9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.39.9e-31288183
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                           f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F 
  Traes_2AL_41E2E66D9.1  2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRGGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFC 88
                           89***************************955556888**********************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.11E-25187No hitNo description
Gene3DG3DSA:2.40.330.108.1E-39190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29189IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.536294IPR003340B3 DNA binding domain
SMARTSM010191.1E-17291IPR003340B3 DNA binding domain
PfamPF023621.2E-27288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DAAANEKGLL LSFEDRGGKL WRFRYSYWNS  60
SQSYVMTKGW SRFVKEKRLD AGDTVSFCRG AADA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4518913102DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745461e-144AK374546.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663443.13e-63PREDICTED: B3 domain-containing protein Os02g0683500
SwissprotQ7F9W22e-63Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLF2EEH04e-64F2EEH0_HORVD; Predicted protein
TrEMBLW5ARK62e-65W5ARK6_WHEAT; Uncharacterized protein
STRINGGRMZM2G018485_P018e-63(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-55B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]